SPM deformation field

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Inheritance graph

Defined in file : brainvisa/toolboxes/spm/types/MRI_spm.py

Used in the following processes

CAT12 - Segment
compute brain Volume data (MNI space)
Intensity normalisation PET Pipeline (spm12)
Intensity normalisation PET Pipeline (spm8)
Optimal PiB Reference Region
ROI based analysis PET Pipeline (spm12)
ROI based analysis PET Pipeline (spm8)
segmentation choice (spm8)
spm12 - Segment
spm8 - New Segment
spm8 - VBM Segmentation

Associated formats

BrainVISA volume formats
gz compressed NIFTI-1 image
NIFTI-1 image

Associated ontology rules

  • brainvisa-3.2.0 :
    • {center}/{subject}/longitudinal_preprocessings/spm12Serial/avg_{acquisition_sequence}/{analysis}/iy_<subject>_{acquisition}_to_avg_<acquisition_sequence>_inverse_deformation_field
    {center}/{subject}/longitudinal_preprocessings/spm12Serial/avg_{acquisition_sequence}/{analysis}/y_<subject>_{acquisition}_to_avg_<acquisition_sequence>_deformation_field
    {center}/{subject}/longitudinal_preprocessings/spm12Pairwise/avg_{acquisition_sequence}/{analysis}/iy_<subject>_{acquisition}_to_avg_<acquisition_sequence>_inverse_deformation_field
    {center}/{subject}/longitudinal_preprocessings/spm12Pairwise/avg_{acquisition_sequence}/{analysis}/y_<subject>_{acquisition}_to_avg_<acquisition_sequence>_deformation_field
    {center}/{subject}/spm/cat12Segment/{acquisition}/{analysis}/mri/y_<subject>
    {center}/{subject}/spm/cat12Segment/{acquisition}/{analysis}/mri/iy_<subject>
    {center}/{subject}/spm/spm12Segment/{acquisition}/{analysis}_LDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/spm/spm12Segment/{acquisition}/{analysis}_LDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
    {center}/{subject}/spm/spm12Segment/{acquisition}/{analysis}_HDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/spm/spm12Segment/{acquisition}/{analysis}_HDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
    {center}/{subject}/spm/spm8VBMSegmentation/{acquisition}/{analysis}_LDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/spm/spm8VBMSegmentation/{acquisition}/{analysis}_LDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
    {center}/{subject}/spm/spm8VBMSegmentation/{acquisition}/{analysis}_HDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/spm/spm8VBMSegmentation/{acquisition}/{analysis}_HDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
    {center}/{subject}/spm/spm8NewSegment/{acquisition}/{analysis}_LDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/spm/spm8NewSegment/{acquisition}/{analysis}_LDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
    {center}/{subject}/spm/spm8NewSegment/{acquisition}/{analysis}_HDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/spm/spm8NewSegment/{acquisition}/{analysis}_HDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
    {center}/{subject}/spm/spm12Shoot/{acquisition}/{analysis}/y_<subject>_<acquisition>_{from}_Template
  • brainvisa-3.0 :
    • {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
  • brainvisa-3.1.0 :
    • {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/{analysis}/{acquisition}/using_LDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/y_<subject>_forward_deformation_field
    {center}/{subject}/{analysis}/{acquisition}/using_HDW_from_t1mri_to_{template}/iy_<subject>_inverse_deformation_field

    Key attributes

  • brainvisa-3.2.0 :
    • center ,  subject ,  acquisition ,  analysis ,  direction ,  acquisition_sequence ,  processing ,  template ,  warping_method ,  from
  • brainvisa-3.0 :
    • center ,  subject ,  analysis ,  acquisition ,  template ,  direction ,  warping_method
  • brainvisa-3.1.0 :
    • center ,  subject ,  analysis ,  acquisition ,  template ,  direction ,  warping_method